Isidore Rigoutsos, PhD

Contact Dr. Rigoutsos

1020 Locust Street
Room M81 Alumni Hall
Philadelphia, PA 19107

(215) 503-6152
(215) 503-0466 fax

Most Recent Peer-reviewed Publications

  1. Ribosomal RNA fragmentation into short RNAs (rRFs) is modulated in a sex- and population of origin-specific manner
  2. Unification of miRNA and isomiR research: The mirGFF3 format and the mirtop API
  3. IsomiRs and tRNA-derived fragments are associated with metastasis and patient survival in uveal melanoma
  4. Therapeutic potential of FLANC, a novel primate-specific long non-coding RNA in colorectal cancer
  5. Exploration of CCA-added RNAs revealed the expression of mitochondrial non-coding RNAs regulated by CCA-adding enzyme
  6. TRNA-derived fragments as sex-dependent circulating candidate biomarkers for Parkinson's disease
  7. Short RNA regulators: the past, the present, the future, and implications for precision medicine and health disparities
  8. TRNA fragments show intertwining with mRNAs of specific repeat content and have links to disparities
  9. Small RNA Sequencing across Diverse Biofluids Identifies Optimal Methods for exRNA Isolation
  10. Profiles of miRNA Isoforms and tRNA Fragments in Prostate Cancer
  11. Race disparities in the contribution of miRNA isoforms and tRNA-derived fragments to Triple-negative breast cancer
  12. Accurate profiling and quantification of tRNA fragments from RNA-Seq Data: A Vade Mecum for MINTmap
  13. MINTbase v2.0: A comprehensive database for tRNA-derived fragments that includes nuclear and mitochondrial fragments from all the Cancer Genome Atlas projects
  14. Increasing cell density globally enhances the biogenesis of Piwi-interacting RNAs in Bombyx mori germ cells
  15. The biogenesis pathway of tRNA-derived piRNAs in Bombyx germ cells
  16. Integrated Genomic Characterization of Pancreatic Ductal Adenocarcinoma
  17. An miRNA expression signature for the human colonic stem cell niche distinguishes malignant from normal epithelia
  18. Threshold-seq: A tool for determining the threshold in short RNA-seq datasets
  19. N-BLR, a primate-specific non-coding transcript leads to colorectal cancer invasion and migration
  20. YAMAT-seq: An efficient method for high-throughput sequencing of mature transfer RNAs